Now we're getting to the part that makes strong men cry and want to run off and hide...mitering the sides of the Spanish cedar liner box-within-the-box. Cutting the bottom and top were no problem at all because there is plenty of room for error since these 1/4" thick sides will hide those narrow little gaps. However, since the miters for the sides are visible to all and sundry there is no, none, zip, nada allowance for uh-oh's when you make these cuts. This is probably the most critical and nerve-wracking part of the entire project. You want these cuts spot on accurate but at the same time you can't make the parts so tight that they fit too snugly and have no room to move when hit with the moisture you're going to lock in the box. You leave them just loose enough that when they get up to 65% they expand just enough to tighten up the fit just a fraction.
The liner should project about 5/16" above the sides of the main box so the lid can come down over it and form a good seal. So you have to have the bottom liner in place before you can measure how wide the sides should be.
So after you determine how wide to cut the stock to make the sides you cut the stock almost to width, then final dimension on the router table.
That's my old Hegner scroll saw I'm using to cut the short stuff. It's a great machine that I bought from the widow of a dead friend years ago to help her clear out his shop. Paid $450 for it then and they were going new for close to $1000.